Website Security Audit: Step-by-Step Guide

Protect your website from cyber threats with a comprehensive security audit. Learn about common vulnerabilities like malware, phishing, and SQL injections. Discover simple steps to enhance your site's security and protect your business.
By SentinelOne February 24, 2025

In this digital era, business owners are under constant threat due to increasing cyberattacks. A report by Norton reveals that cyberattacks have increased by 46% compared to the last year. Most of these threats come from web activity that shows website owners are at high risk. The report finds that over a billion unique attacks are being blocked by businesses every month. So, it becomes crucial to implement effective security measures that prevent data breaches, malware infections, and hacking attempts.

With regular security audits, website owners can prevent data breaches and maintain the trust of their users. A thorough website audit assesses every aspect of its security framework, such as CMS platforms, plugins, web servers, and third-party services.

The below step-by-step guide will walk you through the entire website security auditing process. You will also learn about common website security threats, the significance of regular audits, and best practices to protect your site from cyberattacks.

What is a Website Security Audit?

A website security audit systematically examines a website’s security framework to expose vulnerabilities and risks. During an audit, experts aim to discover security weaknesses and fix them before exploitation by cybercriminals. The audit goal is to verify whether existing security measures can defend your website against threats like data breaches, cyberattacks, malware, and hacking. An IBM survey shows that 40% of data breaches involve data stored in public clouds and have incurred the highest average breach cost of $5.17 million.

A website security audit is defined as the process of conducting a detailed evaluation of all potential threats on a website. With regular security audits, website owners can protect their sensitive data while securing users. During a comprehensive website security audit, professionals examine website files and code alongside configurations and access controls and review security policies and procedures. The reviewers evaluate several security layers by checking network security, application security, and industry-standard compliance.

Why Is Website Security Auditing Important?

Website security auditing helps you to reveal and address potential cyber threats, unauthorized access, data breaches, and malware infections. This ensures that your site complies with industry regulations and thus avoids potential fines or legal issues.

Here are a few more reasons why website security audits are so important:

  1. Build and Maintain Trust with Users: Secure websites increase the trust level among users. Therefore, users share their personal and financial information with confidence. Regular audits help you keep your website secure and reliable.
  2. Improve Site Performance: Website security auditing detects performance issues like loading speed or broken links. Fixing these problems will enhance the user experience and, thus, retain visitors to your site.
  3. Avoid Financial Losses: Security breaches are costly and can lead to financial losses and harm your brand’s reputation. Regular auditing can help reduce these risks and protect your business from potential damage.
  4. Enhance Incident Response: With regular website audits, you can monitor suspicious activities. Thus, you can respond to security incidents promptly and eliminate threats as soon as they are detected.
  5. Jumpstart Search Engine Rankings: Search engines like Google rank secure websites higher. This means that having strong security measures can help you improve your search engine ranking and make it easier for people to discover your website.

Key Objectives of a Website Security Audit

With regular security audits, you can keep your website safe, your users happy, and your business running smoothly.

A website security audit is like a thorough check-up of your website that:

  • Finds and fixes website weaknesses.
  • Checks if your current security tools are working.
  • Adds extra layer of protection if needed.
  • Ensures you are maintaining compliance with the industry standards.
  • Looks for viruses or hacker activities.

Now let’s understand the key objectives of a website security audit in detail:

  1. Identify and fix security vulnerabilities and weaknesses: During a website security audit, experts inspect the website code, plugins, and server settings for weaknesses that hackers could exploit. If they find any weak spots, they can help you fix them to avoid any vulnerabilities and weaknesses.
  2. Assessment of the current security status: Assessing current security status involves evaluating how well your website security measures are functioning. This includes checking firewalls, SSL certificates, password policies, and other protective measures to ensure these are effectively guarding your website.
  3. Implementing additional security measures where necessary: At times, the security measures you have in place are not sufficient. For instance, if your website does not have two-factor authentication (2FA) or regular backups, the auditors will suggest including these features to further strengthen your website security system.
  4. Maintaining industry compliance with security standards and regulations: Different industries regulate differently how a website should protect its user data. For example, if you operate an e-commerce business, you might be subject to rules like GDPR for customer data protection and PCI DSS for handling payment info. A website security audit can help you determine what additional measures you should take to enhance the security of your website.
  5. Detecting malware and unauthorized access: Malware is a kind of virus that can harm your website or take your information. It gives unauthorized access to your website without your permission. During an audit, your website is scanned for malware. If there is evidence of a hack, auditors will help you remove it and prevent similar attacks in the future.

Common Website Security Threats & Risks

Website security threats and risks are major concerns for businesses and individuals alike, as hackers continuously develop new methods to exploit vulnerabilities. Around 59% of organizations were hit by ransomware in the last year.

Here are some other common threats that can harm website owners extensively:

  1. Malware: Malware finds its way into websites by exploiting existing site code vulnerabilities or using contaminated third-party libraries. Once implemented on a site, this type of software can perform data theft, direct users to dangerous websites, and even gain control of the server function. Additionally, it can transfer harmful content to visitors’ machines.
  2. Phishing Scams: Phishing scams attempt to make people hand over their personal information by leading them to fake pages. In most cases, such scams are sent via emails or websites. The information that the user enters on the webpage gets recorded by the phisher for misuse.
  3. SQL Injection: In SQL injection attacks, hackers place wrong instructions into a website’s database. This enables them to read, modify, or delete information in the database which may lead to data breaches or damage the website. Due to failures in user input handling, attackers can alter SQL commands in websites to gain access to the database.
  4. Cross-Site Scripting: Cross-site scripting (XSS) is a cyberattack where hackers place harmful scripts on a legitimate website. Then, they make the scripts run on the browsers of people who visit the site. The scripts take control of the browser environment on the target websites to steal data or redirect users to dangerous websites.
  5. Denial of Service: A denial-of-service (DoS) attack can disrupt services by flooding a website with traffic. This can lead to the website crashing or running very slowly, cutting off access for genuine users. It is like a traffic jam on an Internet highway causing chaos.
  6. DDoS Attacks: A Distributed Denial of Service (DDoS) attack is similar to a DoS attack in the fact that it aims to take a website offline, but what makes it different is that it is carried out by multiple devices at once (such as a network of compromised computers also known as a botnet). This can cause more problems and damage since the attack comes from different locations.
  7. Brute Force Attacks: In brute force attacks, hackers attempt many different usernames and passwords to guess the correct one. With the help of automated tools, attackers can try out thousands or even millions of combinations within a short time frame. This can provide them access to a website’s admin area, which they can use to alter content or steal information.

Website Security Auditing: Step-by-Step Guide

Performing a complete security audit on a website is not a one-off exercise but a process that needs to be done regularly to protect the organization’s assets. This section will assist you in understanding how to security audit a website and provides a complete auditing checklist.

A website security audit checklist is a list of steps and items to check during an audit, such as checking for outdated software and testing for common vulnerabilities. Let’s explore the complete checklist.

Step 1: Define the scope of the audit

Ensures that all the important aspects are covered in the auditing process. Therefore, first of all, determine the parts of your website that will be examined, for example:

  • Web applications developed specifically for the site or content management systems.
  • The hardware and software that host your website.
  • Other integrations, including APIs, plugins, and other related services.

Step 2: Collect information that is relevant to the issue

It is important to gather information before performing an audit. This information will assist the auditors in understanding your organization’s website security posture and the possible risks. It collects details on the technologies used on your website, programming languages, frameworks, and server software.

Step 3: Perform vulnerability scan

In this phase, you must scan your website to detect vulnerabilities like SQL Injection, cross-site scripting, and cross-site request forgery. The use of an automated website security audit tool can help you find many problems and possible threats to your site. Some popular auditing tools are OpenVAS, Nessus, and Burp Suite.

Step 4: Manual testing

Automated tools can discover many vulnerabilities, but may fail to discover all of them, especially those which require human expertise. Manual testing includes:

  • Reviewing the source code of the website for security loopholes.
  • Business logic testing: In this step, professionals try to understand how the application processes information.
  • Session management testing: Here, auditors check cookies security, session timeout, and logout features.

Step 5: Review access controls

Access controls are critical to the protection of sensitive data and functions. By reviewing access controls, you can avoid unauthorized access and minimize the risk of data breaches. In this step, review the following aspects:

  • User roles and permissions
  • Authentication mechanisms
  • Evaluate the password policies
  • Two-factor authentication

Step 6: Analyze security configurations

Incorrect settings are a common cause of security vulnerabilities. Check the security level of your website configuration, including web server configuration, SSL/TLS certificate installation, and content security policy implementation. This risk can be reduced through the use of strong passwords as well as account lockout mechanisms.

Step 7: Check for malware

Malware represents any type of harmful software that aims to damage computer systems.

Malware can make changes to your website and make it insecure. You should check your website for malware and security threats using automated tools and once the malware is found, you should remove it from your website.

Step 8: Review backup and recovery procedures

In this step, auditors check on your backup schedule, what you back up, where the backups are kept, the security level of your storage location, and how you recover your system. They take proactive security measures wherever required to ensure that you restore your website easily in case of a failure or cyber-attack.

Step 9: Evaluate compliance with security standards

In this step, check on your website’s compliance with standard regulations. Based on the industry, there are various security standards that you may have to meet:

  • For companies doing business in Europe – the General Data Protection Regulation.
  • Websites that accept credit cards must meet the Payment Card Industry Data Security Standard.

Step 10: Note down findings and recommendations

When the audit is done, it is recommended that you prepare a website security audit report that documents all the findings made. The document should include vulnerabilities discovered during the audit and their effects on your website and business. The report should also include actionable steps to mitigate each vulnerability, including timelines for implementation. Then prioritize and categorize vulnerabilities based on their severity.

Step 11: Recommended suggestions should be put into practice

Based on the findings and recommendations, implement the required security measures to improve the general security status of the website. To optimize your website, you must fix identified vulnerabilities, update software and plugins, strengthen security policies, verify user authentication, and establish a process for routine website checking.

Benefits of Website Security Audits

Customers mostly use a business with a secure website. When a site is safe, customers know the owners care about their data and privacy. A thorough website security audit can help you ensure users’ safety.

Here are some other benefits of auditing your website security regularly:

  • Improves Security: Audits provide specific recommendations for how to enhance your website security. Upon implementing these steps, organizations can implement effective security measures against cyberattacks.
  • Comply with Laws: Some industries need you to comply with data protection regulations. Through regular audits, website owners can remain compliant with such standards and thus avoid penalties and lawsuits.
  • Decrease Cost: Periodic auditing of the website prevents the expenses of a breach. The cost of recovering from cyberattacks, lawyer fees, and building a company’s reputation again is higher than website auditing.
  • Reduces Downtime: Periodic website audit averts attacks, hence minimizing website downtime. This guarantees business continuity, customer access, and no revenue loss from service interruptions. Thus, saving you time and money.
  • Protects Data: Audits may assist website owners in safeguarding sensitive data such as customer information, financial information, and company intellectual property. Therefore, it avoids legal repercussions, loss of company reputation, and customers’ trust.
  • Build Brand Reputation: Showing security awareness is key to gaining the trust of customers and retaining them. A secure website is reliable and can be trusted by customers, thus improving the company’s image.
  • Proactive Risk Management: Website security audit identifies vulnerabilities that attackers can exploit and thus lower the risk of a data breach. A secure site can be a great way to achieve a competitive edge by demonstrating your dedication to data security.

Challenges in Website Security Auditing

The nature of cyber threats keeps changing due to evolving technologies and vulnerabilities. To handle these changing threats, one must continuously learn, adapt, and audit their website security regularly.

Here are a few challenges in website security auditing that need your attention:

  1. Complex Web Applications: Today’s web applications consist of several components. The increasing complexity of these applications makes it hard for you to detect all possible vulnerabilities and requires someone updated with the latest trends and technologies in cybersecurity.
  2. Skills Gap: Hire the right security professionals with the needed expertise to perform thorough website audits. The shortage of cybersecurity talent makes it hard to recruit and retain staff. So, the best option is to outsource your expert team.
  3. Cost of Audit: A thorough security audit can be expensive, and the expense increases with the size and complexity of the website. This can present a problem for some organizations, including small to medium-sized businesses.
  4. Integrating Security in the Development Phase: Implementing security measures across the software development lifecycle remains difficult. To achieve this, you will need a competent development and security team to take care of this challenge.
  5. False Positives: Using automated scanning tools can produce false positives that may report vulnerabilities without practical exploitation potential. Evaluating these false positives leads to unnecessary time and money allocation.
  6. Maintaining Security Posture: To sustain a high-security posture after an audit, organizations must continuously monitor their websites along with regular patching and updates. This is a problem for businesses that may have limited resources.
  7. Time Constraints: Conducting a full security audit takes a long time, especially for bigger websites. Meeting these security requirements can conflict with project delivery timelines. So, take help from competent experts in this domain to save time.

Best Practices for Website Security Auditing

A routine security check-up is recommended for all websites. Regular website security audits detect issues before they develop into severe problems. You must do a website security audit to discover and address vulnerabilities, secure your website against attacks, protect your customer’s data, preserve your reputation, and prevent financial losses.

Here are some other best practices for effective website security auditing:

  1. Use Automated Tools: To perform the security audit, you can use automated tools, do manual testing, or hire professional security experts to review your website code and configurations for vulnerabilities. A website audit software can help you with the automated security scanning. These tools enable professionals to detect frequently found security vulnerabilities.
  2. Review User Permissions: A thorough audit can help you check who can access your website and their privileges. Restrict access to your website only to those who belong there to avoid security breaches. It is advised that a security audit should be done at least once a year. However, if you made changes to your website or deal with sensitive information it should be done more frequently.
  3. Update Software Regularly: Maintain the latest versions of every component on your website including your CMS, plugins, and themes. Security problems are frequently resolved through updates. Also, keep your browsers updated and always use a secure internet connection.
  4. Implement Strong Password Policies: Ensure all users select strong passwords and warn them to avoid using the same password across different accounts. Show users how to create strong passwords by demonstrating combinations of small and big letters, numbers, and symbols. Two-factor authentication should be turned on to boost security as much as possible.
  5. Backup Data: Save your website data at regular intervals. Thus, you can safely restore your site from previous versions when issues arise without losing valuable content. Keep your backup locations safe with password protection if it is offline. If the data is stored online, you will need to keep a security check for your cloud servers.
  6. Monitor Traffic: Pay attention to what happens on your website. Review your website code, test for bugs, check configurations, and search for potential security gaps. Threats such as hacking attempts can be suspected when there is an unusual traffic pattern or sudden traffic increase.
  7. Prioritize Staff Training: Demonstrate safety standards to all personnel who work with your website. Trained staff is less prone to making common mistakes that pose security risks for your website. Secure practices among your team members lower human-related security risks.
  8. Check SSL Certificates: Verify that your website uses SSL certificates to protect encrypted data exchanges between visitors and your site. Thus, you can assure users that your website is reliable and safe. You can verify secure connections by looking for “https://” in your browser address and a padlock symbol.
  9. Document Results: The key components of a document include vulnerabilities that have been discovered, the severity of the problems, and suggestions on how the problems can be addressed. Archive the results from your security assessments. Record all identified problems and their solutions because this data helps track security changes and inform future improvement decisions.

Conclusion

Safeguarding your digital assets requires a thorough website security audit. A security audit helps you protect sensitive data while building user trust, meeting compliance requirements, and improving website performance. Security audits thoroughly inspect your website’s code and configurations, and access controls to stop data breaches, malware infections, and unauthorized access. This process is done with the help of tools and experts.

Website owners must perform routine security audits to remain proactive against potential threats. A website security audit cost is flexible and depends on the website’s complexity and whether you are using automated tools or professionals for the audit. It can be as low as a few hundred dollars or as high as several thousand dollars.

Implement recommended security measures such as strong password policies, two-factor authentication, and regular software updates. Also, keep your staff informed through security awareness training. With these precautions in place, you will be able to safeguard your business against financial losses while establishing a strong security posture and building a trustworthy online presence.

So do not wait until it’s too late, schedule a comprehensive website security audit today. Act now to save your website against cyber threats and ensure a secure online environment with SentinelOne.

FAQs

1. What is a Website Security Audit?

A website security audit is a thorough scanning and checking of your web site for any hidden dangers or vulnerabilities. Hacked plug-ins, poor password, or malicious code is found. Having them done on regular intervals safeguards user data, strengthens web sites’ architecture, and maintains industry regulations for better digital posture.

2. How to do a Security Audit for the Website?

Start by defining your range, for example, which apps and pages to scan. Gather data on technologies and frameworks in use. Run automated scans for general vulnerabilities, and thereafter verify code, configurations, and access controls manually. Validate backups, patch programs, and strengthen password strength. Finally, provide documented reporting of security and do any patching recommended.

3. What are the Key Components of Website Security Audit Report?

A comprehensive list is provided for vulnerabilities found, along with their impact, and solution suggestions. The report provides information on plugins scanned, code fragments, and configurations. You might also view any discovered mal-ware, configurations gone wrong, and compliance failures. The final component of the report prioritizes each discovery, leading to timely solution to ensure safe cyberspaces.

4. What is a Website Security Audit Checklist?

A website security check list is an organised list of checks for security, such as SSL certificate and current software checks, and server configuration checks. You verify by scanning for malicious code, access testing, and backups. From this template, systematically, you address vulnerabilities, maintain compliance, and improve your site’s overall position for security.

5. How do I conduct a Website Security Audit?

Begin by collecting web-site data, including technologies and plug-ins. Make automated scans for vulnerabilities, and then do code reviews and business-logic testing. Check for valid access controls, password habits, and session treatment. Present your findings in a clear and understandable format. Last but not least, execute recommended security practices to remedy found vulnerabilities.

6. How Often Should You Conduct a Security Audit?

For most sites, their annual scans is sufficient, but frequently changed or sensitive sites may have to have periodic checks. As quickly as possible, have comprehensive testing arranged if you bring in new capabilities or if something is wrong. Continuous checks can identify future vulnerabilities, offer current patching, and build confidence in their clients by having an honest, preemptive safeguard against intrusions.

7. How much does a Website Security Audit Cost?

Costs range between several hundreds to thousands, depending on the intricality of sites, tools employed, and whether in-house professionals or freelance professionals are hired. Automated scans cost less, but their equivalent by hand provide richer insights. Smart investing in periodic audits avoids high costs or investments.

8. Why is a Website Security Audit important?

It identifies weaknesses, makes your site’s protection robust, and lets you satisfy legal and industry mandates. System checks protect data, protect against reputational damage, and ensure visitors their data is secure. Preventing vulnerabilities ahead of time, you save potential losses, minimize downtime, and insure clients’ trust.

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